-----------------------------------------------------------------------------
- Banjo                        Bayesian Network Inference with Java Objects -
- Release 2.2.0                                                 15 Apr 2008 -
- Licensed from Duke University                                             -
- Copyright (c) 2005-08 by Alexander J. Hartemink                           -
- All rights reserved                                                       -
-----------------------------------------------------------------------------
- Project:                                                               50.1
- User:                                                              lsand039
- Dataset:                                  50-vars-377-temporal-observations
- Notes:                                    static bayesian network inference
-----------------------------------------------------------------------------
- Settings file:                                                             
-----------------------------------------------------------------------------
- Input directory:                                 data/release2.0/runA/input
- Observations file:                                                   50.txt
- Observation count:                                                      377
- Number of variables:                                                     51
- Variables are in rows:                                                  yes
- Variable names:                                                      inFile
- Discretization policy:                                                   i7
- Exceptions to the discretization policy:                               none
-----------------------------------------------------------------------------
- Initial structure file:                                                    
- 'Must be present' edges file:                                              
- 'Must not be present' edges file:                                          
- Min. Markov lag:                                                          0
- Max. Markov lag:                                                          0
- Max. parent count:                                                        5
- Equivalent sample size for Dirichlet parameter prior:                   1.0
-----------------------------------------------------------------------------
- Searcher:                                                 SearcherSimAnneal
- Proposer:                                           ProposerRandomLocalMove
- Evaluator:                                        defaulted to EvaluatorBDe
- Decider:                                     defaulted to DeciderMetropolis
-----------------------------------------------------------------------------
- Pre-compute logGamma:                                                    no
- Cache:                                                           fastLevel1
- Cycle checking method:                                   Depth-first Search
-----------------------------------------------------------------------------
- Initial temperature:                                                  25000
- Cooling factor:                                                         0.7
- Reannealing temperature:                                                800
- Max. accepted networks before cooling:                                  250
- Max. proposed networks before cooling:                                25000
- Min. accepted networks before reannealing:                              250
-----------------------------------------------------------------------------
- Output directory:                               data/release2.0/runA/output
- Report file:                      50.1static.report.2016.09.01.15.34.36.txt
- Number of best networks tracked:                                          1
- Max. time:                                                            1.0 h
- Max. restarts:                                                        25000
- Min. networks before checking:                                          250
- Screen reporting interval:                                           10.0 m
- File reporting interval:                                             2.05 h
-----------------------------------------------------------------------------
- Compute influence scores:                                               yes
- Compute consensus graph:                                                yes
- Create consensus graph as HTML:                                         yes
- Create 'dot' output:                                                    yes
- Location of 'dot':  /usr/bin/dot /usr/bin/X11/dot /usr/share/man/man1/dot.1.gz
-----------------------------------------------------------------------------
- XML output directory:                           data/release2.0/runA/output
- XML Report file:                                                           
- XML settings to export:                                                    
- XML parser:                             org.apache.xerces.parsers.SAXParser
- Banjo XML format version:                                               1.0
-----------------------------------------------------------------------------
- Seed for starting search:                                     1472758476032
-----------------------------------------------------------------------------
- Number of threads:                                                        1
-----------------------------------------------------------------------------

Memory info before starting the search: Banjo is using 1 mb of memory
Prep. time used: 228.0 ms
Beginning to search: expect a status report every 10.0 m

Status:  Networks   48341750
         Time       10.0 m (16.6% of max. 1.0 h)
         Re-anneals 506 (2.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   86455750
         Time       20.0 m (33.3% of max. 1.0 h)
         Re-anneals 882 (3.5% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   118948250
         Time       30.0 m (50.0% of max. 1.0 h)
         Re-anneals 1200 (4.8% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   151107750
         Time       40.0 m (66.6% of max. 1.0 h)
         Re-anneals 1528 (6.1% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   183914250
         Time       50.0 m (83.3% of max. 1.0 h)
         Re-anneals 1876 (7.5% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   218350500
         Time       1.0 h (100.0% of max. 1.0 h)
         Re-anneals 2229 (8.9% of max. 25000)
         Banjo is using 5 mb of memory



-----------------------------------------------------------------------------
- Final report                                           Best network overall
-----------------------------------------------------------------------------


Network score: -8225.6059, first found at iteration 201139502
51
 0 2 1 8
 1 1 50
 2 2 10 39
 3 2 27 49
 4 2 1 43
 5 2 13 29
 6 2 14 23
 7 2 12 20
 8 2 13 40
 9 2 20 40
10 2 14 19
11 2 23 24
12 2 23 44
13 2 16 50
14 2 13 45
15 2 13 16
16 2 1 50
17 2 28 39
18 2 3 13
19 2 40 46
20 2 11 49
21 2 1 2
22 2 12 27
23 2 13 42
24 1 27
25 2 3 26
26 2 28 40
27 2 8 50
28 2 3 23
29 2 3 13
30 2 1 13
31 2 13 42
32 2 36 44
33 3 0 10 16
34 2 17 28
35 2 10 16
36 2 6 21
37 1 27
38 2 37 49
39 2 6 42
40 2 13 30
41 2 28 39
42 2 13 29
43 2 16 39
44 2 11 48
45 2 11 40
46 2 27 48
47 2 4 28
48 2 14 42
49 2 1 13
50 0


-----------------------------------------------------------------------------
- Search Statistics                                                          
-----------------------------------------------------------------------------

Statistics collected in searcher 'SearcherSimAnneal':
  Number of networks examined: 218350500
  Total time used: 1.0 h
  High score: -8225.6059, first found at iteration 201139502
  Number of re-anneals: 2229

Statistics collected in proposer 'ProposerRandomLocalMove':
  Additions -- proposed:    72765458
  Deletions -- proposed:    72800181
  Reversals -- proposed:    72784860

Statistics collected in cycle checker 'CycleCheckerCheckThenApply':
  Additions -- considered:  72765458,  acyclic:  52135650
  Deletions -- no cyclicity test necessary
  Reversals -- considered:  72784860,  acyclic:  48407018

Statistics collected in evaluator 'EvaluatorBDe':
  Scores computed:          80024844
  Scores (cache)            placed         fetched        
      with 0 parents:       51             8462103        
      with 1 parents:       2550           105901815      
      with 2 parents:       11553761       5607718        
      with 3 parents:       64252631       20711788       
      with 4 parents:       3947988        1004453        
      with 5 parents:       267863         39798          

Statistics collected in decider 'DeciderMetropolis':
  Additions -- considered:  52135650,  better score:  2894671,  other accepted:  2045125
  Deletions -- considered:  72800181,  better score:  2108316,  other accepted:  2831383
  Reversals -- considered:  48407018,  better score:  3272815,  other accepted:  1727072
  Average permissivity:     0.04

Memory info after completing the search: Banjo is using 5 mb of memory


Network score: -8225.6059, found by thread 1
51
 0 2 1 8
 1 1 50
 2 2 10 39
 3 2 27 49
 4 2 1 43
 5 2 13 29
 6 2 14 23
 7 2 12 20
 8 2 13 40
 9 2 20 40
10 2 14 19
11 2 23 24
12 2 23 44
13 2 16 50
14 2 13 45
15 2 13 16
16 2 1 50
17 2 28 39
18 2 3 13
19 2 40 46
20 2 11 49
21 2 1 2
22 2 12 27
23 2 13 42
24 1 27
25 2 3 26
26 2 28 40
27 2 8 50
28 2 3 23
29 2 3 13
30 2 1 13
31 2 13 42
32 2 36 44
33 3 0 10 16
34 2 17 28
35 2 10 16
36 2 6 21
37 1 27
38 2 37 49
39 2 6 42
40 2 13 30
41 2 28 39
42 2 13 29
43 2 16 39
44 2 11 48
45 2 11 40
46 2 27 48
47 2 4 28
48 2 14 42
49 2 1 13
50 0

-----------------------------------------------------------------------------
- Post-processing                                            Influence scores
-----------------------------------------------------------------------------

Influence score for   (8,0) ->   (0,0)   -.4762
Influence score for   (1,0) ->   (0,0)   -.4287
Influence score for  (50,0) ->   (1,0)   .0000
Influence score for  (39,0) ->   (2,0)   .0000
Influence score for  (10,0) ->   (2,0)   .3307
Influence score for  (49,0) ->   (3,0)   .0000
Influence score for  (27,0) ->   (3,0)   .0000
Influence score for  (43,0) ->   (4,0)   .1371
Influence score for   (1,0) ->   (4,0)   .1145
Influence score for  (29,0) ->   (5,0)   .6451
Influence score for  (13,0) ->   (5,0)   .2634
Influence score for  (23,0) ->   (6,0)   .0000
Influence score for  (14,0) ->   (6,0)   .0000
Influence score for  (20,0) ->   (7,0)   .3211
Influence score for  (12,0) ->   (7,0)   .0647
Influence score for  (40,0) ->   (8,0)   .0000
Influence score for  (13,0) ->   (8,0)   .0000
Influence score for  (40,0) ->   (9,0)   .3104
Influence score for  (20,0) ->   (9,0)   .3104
Influence score for  (19,0) ->  (10,0)   .0000
Influence score for  (14,0) ->  (10,0)   .0000
Influence score for  (24,0) ->  (11,0)   .0000
Influence score for  (23,0) ->  (11,0)   .0000
Influence score for  (44,0) ->  (12,0)   .0000
Influence score for  (23,0) ->  (12,0)   .0000
Influence score for  (50,0) ->  (13,0)   -.4975
Influence score for  (16,0) ->  (13,0)   .0000
Influence score for  (45,0) ->  (14,0)   .0000
Influence score for  (13,0) ->  (14,0)   .0000
Influence score for  (16,0) ->  (15,0)   -.1127
Influence score for  (13,0) ->  (15,0)   .0000
Influence score for  (50,0) ->  (16,0)   -.2394
Influence score for   (1,0) ->  (16,0)   .0954
Influence score for  (39,0) ->  (17,0)   .6456
Influence score for  (28,0) ->  (17,0)   .0000
Influence score for  (13,0) ->  (18,0)   .0000
Influence score for   (3,0) ->  (18,0)   .0741
Influence score for  (46,0) ->  (19,0)   .3311
Influence score for  (40,0) ->  (19,0)   .0000
Influence score for  (49,0) ->  (20,0)   .0000
Influence score for  (11,0) ->  (20,0)   .3164
Influence score for   (2,0) ->  (21,0)   .0000
Influence score for   (1,0) ->  (21,0)   .1667
Influence score for  (27,0) ->  (22,0)   -.3246
Influence score for  (12,0) ->  (22,0)   .0000
Influence score for  (42,0) ->  (23,0)   .3307
Influence score for  (13,0) ->  (23,0)   .3307
Influence score for  (27,0) ->  (24,0)   .0000
Influence score for  (26,0) ->  (25,0)   .0000
Influence score for   (3,0) ->  (25,0)   .3105
Influence score for  (40,0) ->  (26,0)   .0000
Influence score for  (28,0) ->  (26,0)   .0000
Influence score for  (50,0) ->  (27,0)   .0000
Influence score for   (8,0) ->  (27,0)   .0000
Influence score for  (23,0) ->  (28,0)   .3311
Influence score for   (3,0) ->  (28,0)   .3311
Influence score for  (13,0) ->  (29,0)   .0000
Influence score for   (3,0) ->  (29,0)   .3307
Influence score for  (13,0) ->  (30,0)   .0000
Influence score for   (1,0) ->  (30,0)   .3197
Influence score for  (42,0) ->  (31,0)   .3307
Influence score for  (13,0) ->  (31,0)   .3307
Influence score for  (44,0) ->  (32,0)   .4693
Influence score for  (36,0) ->  (32,0)   .0000
Influence score for  (16,0) ->  (33,0)   -.1633
Influence score for  (10,0) ->  (33,0)   .3320
Influence score for   (0,0) ->  (33,0)   -.0349
Influence score for  (28,0) ->  (34,0)   .1619
Influence score for  (17,0) ->  (34,0)   .3311
Influence score for  (16,0) ->  (35,0)   -.3916
Influence score for  (10,0) ->  (35,0)   .0000
Influence score for  (21,0) ->  (36,0)   .0000
Influence score for   (6,0) ->  (36,0)   .0000
Influence score for  (27,0) ->  (37,0)   .0000
Influence score for  (49,0) ->  (38,0)   .3243
Influence score for  (37,0) ->  (38,0)   .2385
Influence score for  (42,0) ->  (39,0)   .0000
Influence score for   (6,0) ->  (39,0)   .3164
Influence score for  (30,0) ->  (40,0)   .0000
Influence score for  (13,0) ->  (40,0)   .0000
Influence score for  (39,0) ->  (41,0)   .0000
Influence score for  (28,0) ->  (41,0)   .0000
Influence score for  (29,0) ->  (42,0)   .4972
Influence score for  (13,0) ->  (42,0)   .0000
Influence score for  (39,0) ->  (43,0)   .0000
Influence score for  (16,0) ->  (43,0)   .0000
Influence score for  (48,0) ->  (44,0)   .3829
Influence score for  (11,0) ->  (44,0)   .0649
Influence score for  (40,0) ->  (45,0)   .1644
Influence score for  (11,0) ->  (45,0)   .3144
Influence score for  (48,0) ->  (46,0)   .1664
Influence score for  (27,0) ->  (46,0)   .0000
Influence score for  (28,0) ->  (47,0)   -.4025
Influence score for   (4,0) ->  (47,0)   .3720
Influence score for  (42,0) ->  (48,0)   .0000
Influence score for  (14,0) ->  (48,0)   .0000
Influence score for  (13,0) ->  (49,0)   .0000
Influence score for   (1,0) ->  (49,0)   .0000

-----------------------------------------------------------------------------
- Post-processing                                  DOT graphics format output
-----------------------------------------------------------------------------

digraph abstract { 

label = "Banjo Version 2.2.0\nHigh scoring network, score: -8225.6059\nProject: 50.1\nUser: lsand039\nDataset: 50-vars-377-temporal-observations"; 
labeljust="l"; 

    0 [label="Alzheimer"];
    1 [label="GNG4"];
    2 [label="THBS1"];
    3 [label="SIX6"];
    4 [label="GRIK1"];
    5 [label="WWC1"];
    6 [label="KIR2DS3"];
    7 [label="CEACAM6"];
    8 [label="NDUFA7"];
    9 [label="TLR8"];
    10 [label="FAIM3"];
    11 [label="MDFIC"];
    12 [label="GH1"];
    13 [label="REG1B"];
    14 [label="NTRK1"];
    15 [label="PDZD3"];
    16 [label="EDN1"];
    17 [label="ERGIC3"];
    18 [label="S100A2"];
    19 [label="HS3ST1"];
    20 [label="OR12D3"];
    21 [label="BCL3"];
    22 [label="PTGER1"];
    23 [label="LBP"];
    24 [label="MAP3K13"];
    25 [label="LAG3"];
    26 [label="CAMP"];
    27 [label="MLLT1"];
    28 [label="DSG3"];
    29 [label="CYP2C18"];
    30 [label="LPHN2"];
    31 [label="TTC12"];
    32 [label="KANK2"];
    33 [label="KIR2DS5"];
    34 [label="PF4"];
    35 [label="MCF2L2"];
    36 [label="OSBPL1A"];
    37 [label="AP3B2"];
    38 [label="ABCA1"];
    39 [label="SGPL1"];
    40 [label="NTNG1"];
    41 [label="NFE2"];
    42 [label="CABP5"];
    43 [label="NOC2L"];
    44 [label="PTK7"];
    45 [label="CFTR"];
    46 [label="NPY6R"];
    47 [label="SHANK1"];
    48 [label="SNTB2"];
    49 [label="ST8SIA2"];
    50 [label="BMPR2"];

    1->0;
    8->0;
    50->1;
    10->2;
    39->2;
    27->3;
    49->3;
    1->4;
    43->4;
    13->5;
    29->5;
    14->6;
    23->6;
    12->7;
    20->7;
    13->8;
    40->8;
    20->9;
    40->9;
    14->10;
    19->10;
    23->11;
    24->11;
    23->12;
    44->12;
    16->13;
    50->13;
    13->14;
    45->14;
    13->15;
    16->15;
    1->16;
    50->16;
    28->17;
    39->17;
    3->18;
    13->18;
    40->19;
    46->19;
    11->20;
    49->20;
    1->21;
    2->21;
    12->22;
    27->22;
    13->23;
    42->23;
    27->24;
    3->25;
    26->25;
    28->26;
    40->26;
    8->27;
    50->27;
    3->28;
    23->28;
    3->29;
    13->29;
    1->30;
    13->30;
    13->31;
    42->31;
    36->32;
    44->32;
    0->33;
    10->33;
    16->33;
    17->34;
    28->34;
    10->35;
    16->35;
    6->36;
    21->36;
    27->37;
    37->38;
    49->38;
    6->39;
    42->39;
    13->40;
    30->40;
    28->41;
    39->41;
    13->42;
    29->42;
    16->43;
    39->43;
    11->44;
    48->44;
    11->45;
    40->45;
    27->46;
    48->46;
    4->47;
    28->47;
    14->48;
    42->48;
    1->49;
    13->49;
}

